I'm having a problem with the alignment tool extract option. In the past I've had problem with the alignment tool not agreeing with the faces. Specifically, if I made a change to an alignment, and then did something like a remove-faces operation, the changed alignments would no longer agree with the image in the faces folder. For example, if I tweak an alignment that changes the bounding box, the face orientation and position changes accordingly. I'm assuming this is because the alignments tool doesn't write out a revised face image to the face folder when saving changes. Also, I would fix an alignment problem with a face, but then noticed that training would still go squirlly on it because the face in the folder never changed. So after completing my landmark tweaks I got in the habit of using the alignment tool extract function to re-extract all of the faces (after deleting all of the original faces). However, I noticed that the images written out don't always match the alignments info - i.e. the image written out is not identical to the (green) extract bounding box/image in the face strip. In some cases, where the original landmarks were way off for some reason, the face written out is also way off. Like maybe only a forhead or chin showing, or the face is clearly too small for a properly registered face. It's as though the alignment tool extract is using the original extract bounding box info instead of the revised location, except that it seems to be a vertical offset - too high or too low, rather than off to right or left. Any idea what's going on here? Shouldn't the new images extracted by the tool match the image in the revised extract bounding box? Thanks.
EDIT: I've added a visual. The first two images show the alignment frame and face info, and the third shows the image written out using the alignments tool extract funciton. The last two images should be identical.